Research Publications Archive - Biomedical Computer Vision

Publications

Our publications by year

New frontiers in artificial intelligence for biodiversity research and conservation with multimodal language models

Methods in Ecology and Evolution (2026)

Comparative validation of surgical phase recognition, instrument keypoint estimation, and instrument instance segmentation in endoscopy: Results of the PhaKIR 2024 challenge

Medical Image Analysis (2026)

Early Prediction of MMSE & CSI-D Scores with AI

Alzheimer’s & Dementia (2025)

Multimodal Interpretable Transformer for AD

Alzheimer’s & Dementia (2025)

A Standardized Benchmark for Multilabel Antimicrobial Peptide Classification

NeurIPS Datasets & Benchmarks Track (2025)

Towards Automated Petrography

NeurIPS Datasets & Benchmarks Track (2025)

Completing spatial transcriptomics data for gene expression prediction benchmarking

Medical Image Analysis (2025)

Pixel-wise recognition for holistic surgical scene understanding

Medical Image Analysis (2025)

Pitvis-2023 challenge: Workflow recognition in videos of endoscopic pituitary surgery

Medical Image Analysis (2025)

A new benchmark for machine learning applied to powder X-ray diffraction

Scientific Data (2025)

Adaptive guidance: Training-free acceleration of conditional diffusion models

AAAI (2025)

Deep-TAO: The Deep Learning Transient Astronomical Object data set for Astronomical Transient Event Classification

arXiv (2025)

Egocast: Forecasting egocentric human pose in the wild

WACV (2025)

Invited commentary: deep learning—methods to amplify epidemiologic data collection and analyses

American journal of epidemiology (2025)

CARDIUM: Congenital Anomaly Recognition with Diagnostic Images and Unified Medical records

Third Workshop on Computer Vision for Automated Medical Diagnosis – ICCV (2025)

Latent Gene Diffusion for Spatial Transcriptomics Completion

Third Workshop on Computer Vision for Automated Medical Diagnosis – ICCV (2025 – Oral)

Artificial intelligence for the discovery of antimicrobial peptides

Antimicrobial Peptides (2025)

Computational tools for handling large databases of biological relevance

Antimicrobial Peptides (2025)

SMILE-UHURA Challenge–Small Vessel Segmentation at Mesoscopic Scale from Ultra-High Resolution 7T Magnetic Resonance Angiograms

arXiv (2024)

Multi-center fetal brain tissue annotation (feta) challenge 2022 results

IEEE transactions on medical imaging (2024)

Enhancing gene expression prediction from histology images with spatial transcriptomics completion

MICCAI (2024)

Ego-exo4d: Understanding skilled human activity from first-and third-person perspectives

CVPR (2024)

MuST: Multi-scale Transformers for Surgical Phase Recognition

MICCAI (2024)

Nuclei detection and segmentation of histopathological images using a feature pyramidal network variant of a mask R-CNN

Bioengineering (2024)

Deep Learning at the Intersection: Certified Robustness as a Tool for 3D Vision

arXiv (2024)

Road traffic injuries and the built environment in Bogotá, Colombia, 2015–2019: a cross-sectional analysis

Journal of urban health (2024)

Pytorch-wildlife: A collaborative deep learning framework for conservation

arXiv (2024)

Antimicrobial activities of casein

Casein (2024)

Styleavatar: Stylizing animatable head avatars

WACV (2024)

Sar-rarp50: Segmentation of surgical instrumentation and action recognition on robot-assisted radical prostatectomy challenge

arXiv (2023)

Knowledge Augmented Instruction Tuning for Zero-shot Animal Species Recognition

NeurIPS Workshop on Instruction Tuning and Instruction Following (2023)

Multimodal foundation models for zero-shot animal species recognition in camera trap images

arXiv (2023)

EgoCOL: Egocentric Camera pose estimation for Open-world 3D object Localization@ Ego4D challenge 2023

arXiv (2023)

Piglet: Pixel-level grounding of language expressions with transformers

IEEE Transactions on Pattern Analysis and Machine Intelligence (2023)

3D visualization, skeletonization and branching analysis of blood vessels in angiogenesis

International journal of molecular sciences (2023)

Fest: Learning spatio-temporal priors for fetal brain mri segmentation

ISBI (2023)

JOB-VS: Joint brain-vessel segmentation in TOF-MRA images

ISBI (2023)

Matis: Masked-attention transformers for surgical instrument segmentation

ISBI (2023)

SEPAL: spatial gene expression prediction from local graphs

ICCV workshop of Computer Vision for Automated Medical Diagnosis (2023 – Oral)

STRIDE: Street View-based Environmental Feature Detection and Pedestrian Collision Prediction

IEEE/CVF Interancional Conference on Computer Vision Workshops (ICCVW – 2023)

Guarding the guardians: Automated analysis of online child sexual abuse

Artificial Intelligence (AI) and Humanitarian Assistance and Disaster Recovery (HADR) Workshop, ICCV 2023

Towards characterizing the semantic robustness of face recognition

IEEE/CVF Conference on Computer Vision and Pattern Recognition Workshops (CVPRW – 2023)

Bodiffusion: Diffusing sparse observations for full-body human motion synthesis

Proceedings of the IEEE/CVF International Conference on Computer Vision (ICCV) Workshops (2023)

430 training neural networks to identify built environment features for pedestrian safety

Injury prevention (2022)

Adversarially robust panoptic segmentation (ARPaS) benchmark

ECCV (2022)

SuperFormer: Volumetric Transformer Architectures for MRI Super-Resolution

Simulation and Synthesis in Medical Imaging: 7th International Workshop, SASHIMI (2022)